Downloaded over 20,000 times and cited in over 400 peer-reviewed publications. AltAnalyze has hundreds of active users and is being actively developed as an open-source project.

AltAnalyze recieves funding from NIH National Cancer Institute (R01CA226802).

News: See our new manuscripts describing the AltAnalyze workflows ICGS2 and cellHarmony and their application, in new article in Nature.

cellHarmony
Supervised Cell-State Classification Analysis

CellHarmony is a cell-matching algorithm to identify a cell's most similar analogue in a distinct single-cell RNA-Seq (scRNA-Seq) dataset. A preprint manuscript describing cellHarmony can be found in bioRxiv. A set of data for analysis can be found in the latest version of AltAnalyze in the DemoData/cellHarmony folder along with instructions.