Associated Computational Tools:
scTriangulate - Multiomic single-cell integration in Python
pyInfinityFlow - Full spectrum flow analysis in Python
ICGS2 - Single-cell analysis in Python
cellHarmony - Alignment and comparison of scRNA-Seq

Code Repositories:
Human Bone Marrow Titration Atlas (GitHub)

Datasets and References (Downloads):
Human Bone Marrow Atlas v.2.0 (Synapse GEO Flow)
Human Bone Marrow Atlas v.1.0 (Synapse)

News:
12/28/2023 - Human Marrow Azmiuth/ShinyCell online
12/11/2018 - Human MEP atlas online
09/21/2018 - Human Bone Marrow HCA atlas online


 

Human Bone Marrow Cell Atlas Portal
Single-cell Genomic Data Explorer  

This website provides access to dynamic interactive web-browsers and RShiny apps for the analysis and exploration of diverse single-cell and multiomic datasets of the bone marrow. The associated studies comprise collaborative work from the Grimes and Salomonis laboratories at Cincinnati Children's. Dozens of file downloads provided in Synapse. Please see the video tutorial walking through the features of this portal.
 
Human Interactive CITE-Seq Cell Atlas (Zhang et al. 2024)
scRNA-Seq Classification (Azimuth) - Tutorial


 ShinyCell Titration Explorer - Tutorial
Donor Combplot Gene Viewer

Markers | Expression Values | h5ad
 Donor Combplot Surface Protein Viewer

ADT Values

Human Legacy Interactive Cell Atlases
null Human Bone Marrow Cell Atlas Portal (version 1.0 ) Hay et al. 2018
null Human Megakaryoctye-Erythroid Progenitor (CombPlot Viewer) Lu et al. 2018