Downloaded over 20,000 times and cited in over 400 peer-reviewed publications. AltAnalyze has hundreds of active users and is being actively developed as an open-source project.

AltAnalyze recieves funding from NIH National Cancer Institute (R01CA226802).

News: See our new manuscripts describing the AltAnalyze workflows ICGS2 and cellHarmony and their application, in new article in Nature.

Bone Marrow Integrated Viewer 
Visualization of single-cell RNA-Seq profiles

To explore neiches of myelopoesis, two recently published large scRNA-Seq studies ( 9k cells -Tikhonova et al. 2019 and 90k cells - Baryawno et al. 2019), were re-analyzed using the software ICGS2 in AltAnalyze and compared (see description in Zhang et al. 2021 Nature and Extended Data Figure 10).

The below links provide fast access to theselarge bone marrow single-cell RNA-Seq datasets, and different sorted captures.