AltAnalyze software, documentation and tutorials  
   

 
AltAnalyze - Alternative Splicing Analysis Tool

AltAnalyze is an easy-to-use application for microarry, RNA-Seq and metabolomics analysis. For splicing sensitive platforms (RNA-Seq or Affymetrix Exon, Gene and Junction arrays), AltAnalyze will assess alternative exon (known and novel) expression along protein isoforms, domain composition and microRNA targeting. In addition to splicing-sensitive platforms, AltAnalyze provides comprehensive methods for the analysis of other data (RMA summarization, batch-effect removal, QC, statistics, annotation, clustering, network creation, lineage characterization, alternative exon visualization, gene-set enrichement and more).

AltAnalyze can be run through an inutitive graphical user interface or command-line and requires no advanced knowledge of bioinformatics programs or scripting. Alternative regulated exons can be subsequently visualized in the context of proteins, domains and microRNA binding sites with the Cytoscape Plugin DomainGraph. For program details and to get answers to common questions, check out the Manual, Wiki, FAQ, Tutorials or User Group.

 
Downloads
Development version 2.0.8.3 - 9/18/14

Release version 2.0.8 - 1/21/14
 
- Mac OSX Installer (.dmg)  
- Windows Archive (.zip) 32bit 64bit    
- Ubuntu Archives (.zip) 32bit 64bit    
- Cross Platform (.zip)    
  dev and archived versions    
Documentation
 
null Manual and Installation Guide
null Tutorials
null News and Updates
null How to Cite
null Contact Us
null AboutUs
null Blog
null FAQ